@----------------------------------------------------------@ | PLINK! | v1.07 | 10/Aug/2009 | |----------------------------------------------------------| | (C) 2009 Shaun Purcell, GNU General Public License, v2 | |----------------------------------------------------------| | For documentation, citation & bug-report instructions: | | http://pngu.mgh.harvard.edu/purcell/plink/ | @----------------------------------------------------------@ Skipping web check... [ --noweb ] Writing this text to log file [ plink.log ] Analysis started: Wed Jul 15 18:34:07 2015 Options in effect: --noweb --bfile america_public_nomiss Reading map (extended format) from [ america_public_nomiss.bim ] 1015583 markers to be included from [ america_public_nomiss.bim ] Reading pedigree information from [ america_public_nomiss.fam ] 20 individuals read from [ america_public_nomiss.fam ] 0 individuals with nonmissing phenotypes Assuming a disease phenotype (1=unaff, 2=aff, 0=miss) Missing phenotype value is also -9 0 cases, 0 controls and 20 missing 17 males, 3 females, and 0 of unspecified sex Reading genotype bitfile from [ america_public_nomiss.bed ] Detected that binary PED file is v1.00 SNP-major mode Before frequency and genotyping pruning, there are 1015583 SNPs 20 founders and 0 non-founders found 811 heterozygous haploid genotypes; set to missing Writing list of heterozygous haploid genotypes to [ plink.hh ] Total genotyping rate in remaining individuals is 0.739667 0 SNPs failed missingness test ( GENO > 1 ) 0 SNPs failed frequency test ( MAF < 0 ) After frequency and genotyping pruning, there are 1015583 SNPs After filtering, 0 cases, 0 controls and 20 missing After filtering, 17 males, 3 females, and 0 of unspecified sex Analysis finished: Wed Jul 15 18:34:23 2015