PLINK v1.90b3.27 64-bit (13 Dec 2015) Options in effect: --bfile SCY_final_mod+anc+Krz2018.flip.excl --keep SCY_final_31_new_ancient_samples.txt --make-bed --out /ebc_data/jmari/Scythian_paper/SCY_FINAL_DATASET/ScyEvolbioHomepage/SCY_final_31_new_ancient_samples Hostname: taevas Working directory: /mmg/jmari/Scythian_paper/SCY_FINAL_DATASET Start time: Tue Jul 9 15:55:59 2019 Random number seed: 1562676959 773823 MB RAM detected; reserving 386911 MB for main workspace. 537802 variants loaded from .bim file. 2821 people (1686 males, 846 females, 289 ambiguous) loaded from .fam. Ambiguous sex IDs written to /ebc_data/jmari/Scythian_paper/SCY_FINAL_DATASET/ScyEvolbioHomepage/SCY_final_31_new_ancient_samples.nosex . 2821 phenotype values loaded from .fam. --keep: 31 people remaining. Warning: Ignoring phenotypes of missing-sex samples. If you don't want those phenotypes to be ignored, use the --allow-no-sex flag. Using 1 thread (no multithreaded calculations invoked. Before main variant filters, 31 founders and 0 nonfounders present. Calculating allele frequencies... done. Total genotyping rate in remaining samples is 0.193244. 537802 variants and 31 people pass filters and QC. Phenotype data is quantitative. --make-bed to /ebc_data/jmari/Scythian_paper/SCY_FINAL_DATASET/ScyEvolbioHomepage/SCY_final_31_new_ancient_samples.bed + /ebc_data/jmari/Scythian_paper/SCY_FINAL_DATASET/ScyEvolbioHomepage/SCY_final_31_new_ancient_samples.bim + /ebc_data/jmari/Scythian_paper/SCY_FINAL_DATASET/ScyEvolbioHomepage/SCY_final_31_new_ancient_samples.fam ... done. End time: Tue Jul 9 15:56:01 2019