The raw data for Y chromosome was extracted form the Complete Genomics
output files retaining the original folder and file structure. See Complete
Genomics webpage for detailed instructions and description of the data
formats.
The raw data can be found in GS000*****.DID folders. Sample info is given in
the Y_data_metainfo.xlsx file. 

The raw reads and mapping data was treated a little bit differently. In the
original Complete Genomics files raw reads and their mapping info is kept in
two separate files. And the info is broken up into several pairs of files.
Making use of the fact that we report here only Y chromosome data we
extracted a read and its mapping info and report these on one line in a
single output file (in the MAP folder).

The data for Mbo samples belonging to haplogroup A00 are downloadable as
bam-files:
GRC13292545.chrY.bam and GRC13292546.chrY.bam

All the data is freely downloadable for non commercial and academic use.

The Australian data listed in GS000036493-DID/ and GS000036494-DID/ can be
used only for non medical and non commercial academic studies. For the
permission please contact Eske Willerslev <ewillerslev@snm.ku.dk>.